Live R Coding Session - Spatial transcriptomics data analysis with STdeconvolve and SpotClean
1:49:47
YouTubeProf. Jean Fan
Live R Coding Session - Spatial transcriptomics data analysis with STdeconvolve and SpotClean
I record myself coding in the R programming language to perform an exploratory bioinformatics analysis of multi-cellular pixel resolution spatial transcriptomics Visium dataset from 10X Genomics using STdeconvolve with SpotClean preprocessing. I hope this will help give students a sense for how I would go about doing an exploratory ...
6K viewsNov 28, 2022
Shorts
FRAP Webinar - Spatial Transcriptomics Technology
2:19:53
137 views
FRAP Webinar - Spatial Transcriptomics Technology
FRAP Network - Cancer du
Spatial Transcriptomics
31:31
152 views
Spatial Transcriptomics
University of Rochester
Spatial Analysis Methods
One Asteroid Crashed Into Another — 10,000× More Debris
0:06
One Asteroid Crashed Into Another — 10,000× More Debris
YouTubeSpatial Theory
52.3K views3 weeks ago
The Sun Blasted Space Dust 6 Million Miles Away
0:04
The Sun Blasted Space Dust 6 Million Miles Away
YouTubeSpatial Theory
69.4K views1 month ago
A Neutron Star This Close Would Stretch Earth with 8G of Tidal Force
0:06
A Neutron Star This Close Would Stretch Earth with 8G of Tidal Force
YouTubeSpatial Theory
42.5K views1 month ago
Top videos
Ben Raphael | Models and Methods for Spatial Transcriptomics | CGSI 2023
40:56
Ben Raphael | Models and Methods for Spatial Transcriptomics | CGSI 2023
YouTubeComputational Genomics
3.7K viewsFeb 12, 2025
Imaging based spatial transcriptomics methods preprocessing and quality control
59:56
Imaging based spatial transcriptomics methods preprocessing and quality control
YouTubeEMBL's European
493 views6 months ago
EP67: A General Guide to Different Spatial Transcriptomics Technologies Part1 (Xenium, MERSCOPE)
25:40
EP67: A General Guide to Different Spatial Transcriptomics Technologies Part1 (Xenium, MERSCOPE)
YouTubeBioTuring Team
394 views6 months ago
Spatial analysis Spatial Data Visualization
A Tiny Moon Creates Giant Waves in Saturn’s Rings
0:06
A Tiny Moon Creates Giant Waves in Saturn’s Rings
YouTubeSpatial Theory
182.3K views1 month ago
The Final Moments of Triton #space #neptune #cosmos
0:06
The Final Moments of Triton #space #neptune #cosmos
YouTubeSpatial Theory
26.2K views4 weeks ago
We are all in this picture. #nasa #artemis #moon
1:13
We are all in this picture. #nasa #artemis #moon
YouTubeStardust - La Chaîne Air &
11.9K views1 month ago
Ben Raphael | Models and Methods for Spatial Transcriptomics | CGSI 2023
40:56
Ben Raphael | Models and Methods for Spatial Transcriptomics | CGSI 2023
3.7K viewsFeb 12, 2025
YouTubeComputational Genomics Summer Institute CGSI
Imaging based spatial transcriptomics methods preprocessing and quality control
59:56
Imaging based spatial transcriptomics methods preprocessing and quality control
493 views6 months ago
YouTubeEMBL's European Bioinformatics Institute EMBL-EBI
EP67: A General Guide to Different Spatial Transcriptomics Technologies Part1 (Xenium, MERSCOPE)
25:40
EP67: A General Guide to Different Spatial Transcriptomics Technologies Part1 (Xenium, MERSCOPE)
394 views6 months ago
YouTubeBioTuring Team
FRAP Webinar - Spatial Transcriptomics Technology
2:19:53
FRAP Webinar - Spatial Transcriptomics Technology
137 views3 months ago
YouTubeFRAP Network - Cancer du Pancréas
Spatial Transcriptomics
31:31
Spatial Transcriptomics
152 views7 months ago
YouTubeUniversity of Rochester Medicine
2026 cell types workshop/ Spatial Transcriptomics
1:13:26
2026 cell types workshop/ Spatial Transcriptomics
213 views3 months ago
YouTubeallen institute
Mapping biology in space a guide to technologies and workflows in spatial transcriptomics
1:00:19
Mapping biology in space a guide to technologies and workflows in spatial transcriptomics
686 views6 months ago
YouTubeEMBL's European Bioinformatics Institute EMBL-EBI
3:19
Tutorial for Advanced Graph Neural Network Analysis for Spatial Transcriptomics
14 views3 months ago
YouTubeAI-Bionexor
1:19:26
Using LLM for Biological Data | Single-cell RNA-seq & Spatial Transcriptomics | Kaggle Tutorial
187 viewsAug 16, 2025
YouTubeFahim Hafiz
See more
Static thumbnail place holder